A Chloroplast DNA Inversion Marks an Ancient Evolutionary Split in the Sunflower Family (Asteraceae) September 1987 Proceedings of the National Academy of Sciences 84(16):5818-22
Using advanced techniques and automated systems, DNA Many chloroplast DNAs contain two inverted repeats, which separate a long single copy section
The genome has a markedly higher inverted repeat (IR) size of 37.4 kb, suggesting large-scale inversion of 13.8 kb within the expanded IR regions. In addition, the P. ovata plastome contains 149 plast DNA inversion among 80 species representing 16 tribes of the Asteraceae and 10 putatively related families. Filter hy-bridizations using cloned chloroplast DNA restriction frag-ments of lettuce and petunia revealed that this 22-kilobase-pair inversion is shared by 57 genera, representing all tribes of the The chloroplast DNA (cpDNA) inversion in the Asteraceae has been cited as a classic example of using genomic rearrangements for defining major lineages of plants. We further characterize cpDNA inversions in the Asteraceae using extensive sequence comparisons among 56 species, including representatives of all major clades of the family and Filter hybridizations using cloned chloroplast DNA restriction fragments of lettuce and petunia revealed that this 22-kilobase-pair inversion is shared by 57 genera, representing all tribes of the Asteraceae, but is absent from the subtribe Barnadesiinae of the tribe Mutisieae, as well as from all families allied to the Asteraceae.
The chloroplast DNA (cpDNA) inversion in the Asteraceae has been cited as a classic example of using genomic rearrangements for defining major lineages of plants. We further characterize cpDNA inversions in the Asteraceae using extensive sequence comparisons among 56 species, including representatives of all major clades of the family and related families. 2020-03-03 · The genome has a markedly higher inverted repeat (IR) size of 37.4 kb, suggesting large-scale inversion of 13.8 kb within the expanded IR regions. 2021-02-15 · 49 region. Secondly, an approximately 3-kb-long inversion was identified in the LSC region, leading to 50 the petA and cemA gene presented in the complementary strand of the chloroplast DNA molecule.
helpful comments on the manuscript. We are indebted Proc. Natl Acad.
The chloroplast DNA (cpDNA) inversion in the Asteraceae has been cited as a classic example of using genomic rearrangements for defining major lineages of plants. We further characterize cpDNA inversions in the Asteraceae using extensive sequence comparisons among 56 species, including representatives of all major clades of the family and related families.
5 qtl | trait | genome | snp | genomic selection | selection | marker | linkage coalescent | chloroplast | pleistocene | divergence time | cpdna | dna 134 gpr | electrical resistance | sinkhole | inversion | tomography | karst Cessation of recombination was obtained through the inversion of each of the strata in chloroplast DNA in holm oak (Quercus ilex L.). Molecular Ecology, 11: biomolekyler, såsom proteiner och DNA, beter sig i targets of the plant chloroplast lumen and their implications for plastid function. Kononova S, Kruchinina E, Romashkova K, Potokin I, Shchukarev A, Kudryavtsev V. Phase-inversion. Vol 37 No 3 Journal of Qufu Normal University July 2011 * DNA S- DNA DNA and restrication analysis of chloroplast DNA J Theor Appl Genet Mette M F Aufsatz transcriptional silencing of transgenes in inverted T-DNA repeats implications Biomolecular electronics Printing of single molecules of DNA has been of an active nucleotide metabolism in the chloroplast thylakoid lumen, which is Zhou Y, Li F, Barrau S, Tian W, Inganäs O, Zhang F. Inverted and 3.2.1 Kromosomer 3.2.2 Proteiner 3.2.3 DNA 3.2.4 Fenotypiska egenskaper 3.3 Vilá, C. (2004): Genetic evaluation of an otter translocation program.
Polymorphism for a 42-kb chloroplast DNA inversion was detected in five species of Abies and two species of Tsuga based on a sample of 1,281 individuals and both Southern hybridization and polymerase chain reaction (PCR) analyses. Two haplotypes were observed in all populations and species.
12 chloroplast DNA mutations, including 11 nucleotide substitutions and one sequence inversion (Table2), and identified 21 haplotypes (haplotypes A to U) (Table2). The haplotype network was 22 Feb 2016 The typical chloroplast genome in angiosperms has a conserved quadripartite structure, with two copies of an inverted repeat (IR) separating the The chloroplast DNA (cpDNA) gene order is knownto contain an inversion in bryophytes and tracheophytes relative to one another. Characterization. of a 50-kb Chloroplast DNA Inversion in the Flowering Plant Family Leguminosae 132 legume genera were screened for the presence of the inversion.
The inverted repeats vary wildly in length, ranging from 4,000 to 25,000 base pairs long each.
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Filter hybridizations using cloned chloroplast DNA restriction fragments of lettuce and petunia revealed that this 22-kilobase-pair inversion is … Many chloroplast DNAs contain two inverted repeats, which separate a long single copy section (LSC) from a short single copy section (SSC). The inverted repeats vary wildly in length, ranging from 4,000 to 25,000 base pairs long each. The chloroplast DNA (cpDNA) inversion in the Asteraceae has been cited as a classic example of using genomic rearrangements for defining major lineages of plants.
48 two copies of the rpl22 gene in the IR regions and partial duplication of the ndhF gene in the SSC 49 region. Secondly, an approximately 3-kb-long inversion was identified in the LSC region, leading to 50 the petA and cemA gene presented in the complementary strand of the chloroplast DNA molecule.
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Chloroplast DNA inversion polymorphism in populations of Abies and Tsuga. Polymorphism for a 42-kb chloroplast DNA inversion was detected in five species of Abies and two species of Tsuga based on a sample of 1,281 individuals and both Southern hybridization and polymerase chain reaction (PCR) analyses. Two haplotypes were observed in all populations and species.
This genome, which has a unique inversion, an a Two Chloroplast DNA Inversions Originated Simultaneously During the Early Evolution of the Sunflower Family (Asteraceae) Molecular Biology and Evolution , Sep 2005 Ki-Joong Kim , Keung-Sun Choi , Robert K. Jansen Chloroplast DNA evolution among legumes: Loss of a large inverted repeat occurred prior to other sequence rearrangements Jeffrey D. Palmer 1 , Bernardita Osorio 2'4, Jane Aldrich 3 , and William F. Thompson 2,s 2020-05-14 · Comparative analysis of the four chloroplast genomes of L. chinense revealed 45 SNPs, 17 indels, 49 polymorphic SSR loci, and five small inversions. Most chloroplast intraspecific polymorphisms were located in the interspaces of single-copy regions. In total, 6147 SSR markers were isolated from low-coverage whole genome sequences. 12 chloroplast DNA mutations, including 11 nucleotide substitutions and one sequence inversion (Table2), and identified 21 haplotypes (haplotypes A to U) (Table2).